http://wiki.proteomics-academy.org/mediawiki/api.php?action=feedcontributions&user=Jd&feedformat=atomEuropean Proteomics Academy - User contributions [en]2024-03-29T15:30:54ZUser contributionsMediaWiki 1.32.0http://wiki.proteomics-academy.org/mediawiki/index.php?title=Protocols&diff=279Protocols2017-01-12T13:33:30Z<p>Jd: Started with protocols</p>
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<div>Here we try to present different protocols.<br />
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== Internal Resources ==<br />
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== External Resources ==<br />
=== Duke Center for Genomic and Computational Biology ===<br />
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This site provides more than 10 protocols ranging from a basic tryptic digest to phosphopeptide enrichment.<br />
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https://genome.duke.edu/cores-and-services/proteomics-and-metabolomics/protocols-reagents</div>Jdhttp://wiki.proteomics-academy.org/mediawiki/index.php?title=Main_Page&diff=278Main Page2017-01-12T13:20:49Z<p>Jd: Added Protocols link</p>
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<div>= Proteomics Academy =<br />
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[[File:Eupa_logo.png|x120px|center]]<br />
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The Proteomics Academy is an education platform of the [http://eupa.org European Proteomics Association (EuPA)]. We organize training events throughout Europe and provide as many of the used training materials on this website.<br />
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People involved in the European Proteomics Academy including scientific advisory board and the education committee can be found [[European Proteomics Academy:People|here]].<br />
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== Courses ==<br />
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The [http://eupa.org EuPA] organizes proteomics courses through Europe.<br />
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The [[EuPA:Courses]] section provides a complete list of courses.<br />
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== Tutorials ==<br />
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You will find in this section a selection of online free tutorials to learn more about proteomics.<br />
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The [[Tutorials]] section provides the entry point to all tutorials found on this site.<br />
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== Educational Videos ==<br />
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You will find in this section a selection of online videos to learn more about proteomics.<br />
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The [[Educational Videos]] section provides the entry point to all educational videos found on this site.<br />
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== Protocols ==<br />
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You will find in this section a selection of protocols to prime your experiments.<br />
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The [[Protocols]] section provides the entry point to all protocols found on this site.</div>Jdhttp://wiki.proteomics-academy.org/mediawiki/index.php?title=Tutorials&diff=277Tutorials2017-01-12T13:12:18Z<p>Jd: Added Skyline tutorials</p>
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<div>Here we try to present a list of useful tutorials that present the basic principles of proteomics technologies.<br />
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== Internal Tutorials ==<br />
These are tutorials created by [[European Proteomics Academy:People|us]] (or our collaborators) especially for this page:<br />
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* Introducing [[Tutorials:Search Engines|search engines]] (example of a search engine page is the [[MSAmanda]] page)<br />
* Introducing [[Tutorials:Distributed Computing|distributed computing]] (example of a distributed computing page is the [[Pladipus]] page)<br />
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== External Tutorials ==<br />
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=== Compomics Tutorials ===<br />
The [https://compomics.com Computational Omics and Systems Biology] Group at the VIB-UGent provide tutorials using user-friendly proteomics bioinformatics tools, most importantly [[SearchGUI]] and [[PeptideShaker]].<br />
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The complete list of tutorials can be found at https://compomics.com/bioinformatics-for-proteomics/.<br />
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Currently, they offer three tutorials:<br />
# [https://compomics.com/bioinformatics-for-proteomics/identification/ Identification techniques]<br />
# [https://compomics.com/bioinformatics-for-proteomics/functional-analysis/ Functional analysis]<br />
# [https://compomics.com/bioinformatics-for-proteomics/data-sharing/ Data sharing]<br />
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=== Skyline Tutorials ===<br />
The [[Skyline]] wiki provides several tutorials on how to use the software.<br />
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The complete list can be found [https://skyline.ms/wiki/home/software/Skyline/page.view?name=tutorials here]<br />
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== Online Video Tutorials ==<br />
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{| class="wikitable"<br />
! Title !!Category !!Description<br />
|-<br />
|[[Video-Tutorial:Pladipus|Pladipus]] || Intermediate / Advanced || Video tutorial on how to set a distributed computing system using [https://compomics.github.io/projects/pladipus.html Pladipus] by Kenneth Verheggen.<br />
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|[https://vimeo.com/97952461 Cross Linking] || Intermediate / Advanced || Video tutorial on how to idenify cross linked peptides using [http://prospector.ucsf.edu/prospector/mshome.htm ProteinProspector] by Robert Chalkley.<br />
|}</div>Jd