Difference between revisions of "MSAmanda"
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To install MSAmanda as a stand-alone search engine. | To install MSAmanda as a stand-alone search engine. | ||
+ | |||
+ | === Running a search === | ||
+ | |||
+ | To run a search simply navigate to the folder where MSAmanda is installed | ||
+ | |||
+ | <syntaxhighlight lang="bash"> | ||
+ | mono MSAmanda.exe /path/to/my/species.fasta /path/to/my/search.mgf /path/to/my/settings.xml | ||
+ | </syntaxhighlight> | ||
== References == | == References == | ||
<references /> | <references /> |
Latest revision as of 07:42, 4 June 2016
Original author(s) | V Dorfer, P Pichler, T Stranzl, J Stadlmann, T Taus, S Winkler, K Mechtler |
---|---|
Citation | Dorfer et al., J Proteome Res. 2014, 13(8):3679-84 |
Usage Details | |
Input format | MGF |
Output format | text, mzIdentML |
Software Details | |
Website | http://ms.imp.ac.at/?goto=msamanda |
Operating system | Windows, Linux, Mac OSX |
License | special license |
Initial release | 01.01.2000 |
Development status | active |
MSAmanda is a free search engine developed at the IMP[1]. Most importantly it is directly integrated into ThermoFisher's ProteomeDiscoverer and SearchGUI.
Contents
Features
MSAmanda was originally developed to replace Mascot in Karl Mechtler's lab at IMP. It is optimized to work with high-resolution data.
Supported Operating Systems
MSAmanda is available in ProteomeDiscoverer which runs on windows. Additionally, a command line version running natively on Windows and using mono on linux and OS X is available as well.
Tutorial
Installing MS Amanda
To install MSAmanda as a stand-alone search engine.
Running a search
To run a search simply navigate to the folder where MSAmanda is installed
mono MSAmanda.exe /path/to/my/species.fasta /path/to/my/search.mgf /path/to/my/settings.xml