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|Original author(s)||V Dorfer, P Pichler, T Stranzl, J Stadlmann, T Taus, S Winkler, K Mechtler|
|Citation||Dorfer et al., J Proteome Res. 2014, 13(8):3679-84|
|Output format||text, mzIdentML|
|Operating system||Windows, Linux, Mac OSX|
MSAmanda is a free search engine developed at the IMP. Most importantly it is directly integrated into ThermoFisher's ProteomeDiscoverer and SearchGUI.
MSAmanda was originally developed to replace Mascot in Karl Mechtler's lab at IMP. It is optimized to work with high-resolution data.
Supported Operating Systems
MSAmanda is available in ProteomeDiscoverer which runs on windows. Additionally, a command line version running natively on Windows and using mono on linux and OS X is available as well.
Installing MS Amanda
To install MSAmanda as a stand-alone search engine.
Running a search
To run a search simply navigate to the folder where MSAmanda is installed
mono MSAmanda.exe /path/to/my/species.fasta /path/to/my/search.mgf /path/to/my/settings.xml